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" Vim syntax file
" Language: AceDB model files
" Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk)
" Last change: Thu Apr 26 10:38:01 BST 2001
" URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim
" Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm
" AceDB software is available from http://www.acedb.org
" quit when a syntax file was already loaded
if exists("b:current_syntax")
finish
endif
syn keyword acedbXref XREF
syn keyword acedbModifier UNIQUE REPEAT
syn case ignore
syn keyword acedbModifier Constraints
syn keyword acedbType DateType Int Text Float
" Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html
syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title
syn keyword acedbMagic Flipped Centre Extent View Default_view
syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes
syn keyword acedbMagic Mapping_data More_data Position Ends Left Right
syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative
syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge
syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag
syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit
syn keyword acedbMagic Locator Magnification Projection_lines_on
syn keyword acedbMagic Marker_points Marker_intervals Contigs
syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood
syn keyword acedbMagic Point_query Point_yellow Point_width
syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne
syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates
syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all
syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap
syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid
syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling
syn keyword acedbMagic DNA Structure From Source Source_Exons
syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele
syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive
syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol
syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title
syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant
syn keyword acedbMagic Tested Selected_trans Backcross Back_one
syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc
syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B
syn keyword acedbMagic Score Score_by_offset Score_by_width
syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X
syn keyword acedbMagic Journal Year Volume Page Author
syn keyword acedbMagic Selected One_all Recs_all One_let
syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected
syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid
syn keyword acedbMagic Reversed_physical Points Positive Negative
syn keyword acedbMagic Point_error_scale Point_segregate_ordered
syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD
syn keyword acedbMagic EMBL_feature Homol Feature
syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width
syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query
syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to
syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A
syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence
syn keyword acedbMagic Visible Properties Transposon
syn match acedbClass "^?\w\+\|^#\w\+"
syn match acedbComment "//.*"
syn region acedbComment start="/\*" end="\*/"
syn match acedbComment "^#\W.*"
syn match acedbHelp "^\*\*\w\+$"
syn match acedbTag "[^^]?\w\+\|[^^]#\w\+"
syn match acedbBlock "//#.\+#$"
syn match acedbOption "^_[DVH]\S\+"
syn match acedbFlag "\s\+-\h\+"
syn match acedbSubclass "^Class"
syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden"
syn match acedbNumber "\<\d\+\>"
syn match acedbNumber "\<\d\+\.\d\+\>"
syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>"
syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline
" Rest of syntax highlighting rules start here
" Define the default highlighting.
" Only when an item doesn't have highlighting yet
hi def link acedbMagic Special
hi def link acedbHyb Special
hi def link acedbType Type
hi def link acedbOption Type
hi def link acedbSubclass Type
hi def link acedbSubtag Include
hi def link acedbFlag Include
hi def link acedbTag Include
hi def link acedbClass Todo
hi def link acedbHelp Todo
hi def link acedbXref Identifier
hi def link acedbModifier Label
hi def link acedbComment Comment
hi def link acedbBlock ModeMsg
hi def link acedbNumber Number
hi def link acedbString String
let b:current_syntax = "acedb"
" The structure of the model.wrm file is sensitive to mixed tab and space
" indentation and assumes tabs are 8 so...
se ts=8